OBO Foundry dashboard analysis¶

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/tmp/ipykernel_611/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.
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Ontologies by number of axioms

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Ontologies by number of classes

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Ontologies by how many ontologies use it

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Different serialisations used

RDF/XML Syntax           4
OWL Functional Syntax    1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 5 6305.0 6004.472416 177.0 2288.0 5352.0 8110.0 15598.0
Declaration 5 973.8 651.451994 113.0 531.0 1226.0 1231.0 1768.0
SubClassOf 5 1015.4 720.835834 49.0 518.0 1155.0 1657.0 1698.0
DisjointClasses 4 17.4 17.586927 0.0 1.0 19.0 25.0 42.0
TransitiveObjectProperty 3 4.6 4.277850 0.0 0.0 7.0 7.0 9.0
ObjectPropertyDomain 3 34.0 38.684622 0.0 0.0 26.0 53.0 91.0
ObjectPropertyRange 3 32.0 36.145539 0.0 0.0 29.0 44.0 87.0
ClassAssertion 3 4.4 8.203658 0.0 0.0 1.0 2.0 19.0
FunctionalObjectProperty 2 2.0 2.828427 0.0 0.0 0.0 4.0 6.0
SymmetricObjectProperty 2 1.4 2.607681 0.0 0.0 0.0 1.0 6.0
SubPropertyChainOf 2 3.2 6.610598 0.0 0.0 0.0 1.0 15.0
SubObjectPropertyOf 2 36.0 49.295030 0.0 0.0 0.0 90.0 90.0
IrrefexiveObjectProperty 2 1.0 1.732051 0.0 0.0 0.0 1.0 4.0
InverseObjectProperties 2 12.0 16.673332 0.0 0.0 0.0 26.0 34.0
EquivalentClasses 2 5.2 8.671793 0.0 0.0 0.0 6.0 20.0
EquivalentObjectProperties 2 4.0 7.382412 0.0 0.0 0.0 3.0 17.0
SubAnnotationPropertyOf 2 5.4 8.354639 0.0 0.0 0.0 8.0 19.0
DataPropertyRange 2 11.0 15.264338 0.0 0.0 0.0 24.0 31.0
DataPropertyDomain 2 8.2 13.084342 0.0 0.0 0.0 11.0 30.0
FunctionalDataProperty 1 1.2 2.683282 0.0 0.0 0.0 0.0 6.0
DifferentIndividuals 1 0.4 0.894427 0.0 0.0 0.0 0.0 2.0
AnnotationPropertyRangeOf 1 0.6 1.341641 0.0 0.0 0.0 0.0 3.0
ObjectPropertyAssertion 1 0.4 0.894427 0.0 0.0 0.0 0.0 2.0
SubDataPropertyOf 1 2.2 4.919350 0.0 0.0 0.0 0.0 11.0
AnnotationPropertyDomain 1 0.2 0.447214 0.0 0.0 0.0 0.0 1.0
AsymmetricObjectProperty 1 1.2 2.683282 0.0 0.0 0.0 0.0 6.0
InverseFunctionalObjectProperty 1 0.4 0.894427 0.0 0.0 0.0 0.0 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 5 2981.4 2065.795440 219.0 1531.0 3429.0 4711.0 5017.0
ObjectSomeValuesFrom 5 155.2 286.290412 11.0 12.0 13.0 75.0 665.0
ObjectAllValuesFrom 3 11.6 14.258331 0.0 0.0 6.0 19.0 33.0
ObjectExactCardinality 3 3.4 6.503845 0.0 0.0 1.0 1.0 15.0
ObjectIntersectionOf 3 13.0 12.165525 0.0 0.0 19.0 20.0 26.0
ObjectUnionOf 3 11.2 17.626684 0.0 0.0 5.0 9.0 42.0
DataExactCardinality 2 4.0 6.164414 0.0 0.0 0.0 6.0 14.0
ObjectMaxCardinality 2 0.6 0.894427 0.0 0.0 0.0 1.0 2.0
ObjectComplementOf 2 6.8 13.084342 0.0 0.0 0.0 4.0 30.0
ObjectMinCardinality 2 1.4 2.607681 0.0 0.0 0.0 1.0 6.0
DataMinCardinality 1 0.2 0.447214 0.0 0.0 0.0 0.0 1.0
DataSomeValuesFrom 1 5.2 11.627553 0.0 0.0 0.0 0.0 26.0
ObjectOneOf 1 0.6 1.341641 0.0 0.0 0.0 0.0 3.0

OBO Score (Experimental)

ontology score score_dash score_impact
3 ngbo 0.430 0.860 0.0
1 bpdo 0.411 0.822 0.0
2 mcro 0.386 0.771 0.0
0 MDO 0.285 0.571 0.0
4 vario 0.155 0.311 0.0

OBO Score Summary

count mean std min 25% 50% 75% max
score 5.0 0.3334 0.114334 0.155 0.285 0.386 0.411 0.43
score_dash 5.0 0.6670 0.228058 0.311 0.571 0.771 0.822 0.86
score_impact 5.0 0.0000 0.000000 0.000 0.000 0.000 0.000 0.00

OBO dependency graph

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